PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P03320_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 189aa    MW: 19416.2 Da    PI: 9.3758
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P03320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP80.16e-251902496
                    TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg................ka 90
                           ++a caar+F+L++eLG+++d++ti WLl+qa+pai+++tgt++ +a ++               +++sss+                ++
  GSMUA_Achr5P03320_001  1 MPAACAARIFQLTRELGHKSDGETIKWLLEQAEPAIIAATGTGTVPAIATnvggtlqI------PTEASSSApltstsapaadggdapNK 84
                           9*****************************************7777744421111111......11111111222111122222222222 PP

                    TCP 91 aksaak 96
                           ++++ +
  GSMUA_Achr5P03320_001 85 RRKKLQ 90
                           222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-19175IPR005333Transcription factor, TCP
PROSITE profilePS5136920.134139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MPAACAARIF QLTRELGHKS DGETIKWLLE QAEPAIIAAT GTGTVPAIAT NVGGTLQIPT  60
EASSSAPLTS TSAPAADGGD APNKRRKKLQ PSRSEGSVAG YFPLQDPLLP GGGTISIPAG  120
LAPLGASGTQ AVIPGCNSRL VNCIFRNSLD KTLVLLVGPS RLPSITKQTG EACSYASWLT  180
NVRKSNLVL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399382.12e-87PREDICTED: transcription factor PCF2-like
SwissprotQ6ZBH67e-41PCF2_ORYSJ; Transcription factor PCF2
SwissprotA2YXQ17e-41PCF2_ORYSI; Transcription factor PCF2
TrEMBLM0SVB11e-134M0SVB1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P03320_0011e-134(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-31TCP family protein